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Software & Patents
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Many of our new methods are available as software, with a maturity ranging from research code to commercially distributed software packages. Some of our new methods have been patented and are ready for use in your company.

Software

The following software of our participating institutions is related to the research activities of Matheon.

Software Short description Participating institution
AMIRA 3D visualization and modeling system with various features such as the generation of 3D surface models from raw image data, direct volume rendering and advanced vector field visualization, commercially distributed by Mercury Computer Systems Inc. ZIB
aws4SPM Toolbox for SPM (Welcome Trust Centre for Neuroimaging) implementing structural adaptive smoothing for fMRI data. WIAS
COSMOS Web front end for a search algorithm for fast 3D data mining in large biomolecule data bases HU Berlin
El-Rambo Software package for nonlinear optimization problems HU Berlin
GELDA GEneral Linear Differential Algebraic equation solver TU Berlin
GENDA GEneral Nonlinear Differential-Algebraic equation solver  TU Berlin
GEOMS General Equations Of Motion Solver: numerical simulation of multibody systems TU Berlin
HyperPlan Complex software package for simulating and planning regional hyperthermia therapy, commercially distributed by Dr. Sennewald Medizintechnik GmbH and BSD Medical Corporation ZIB
ILUPACK Incomplete LU decomposition PACKage, software for solving large linear systems TU Berlin
Imaging with R A series of packages for R implementing structural adaptive smoothing algorithms for color images, functional MRI, DWI and more. WIAS
jcmSuite Software package for the solution of Maxwell's equations in the optical regime, commercially distributed by the spin-off company jcmWave GmbH ZIB
jReality Java class library for interactive 3D visualization on a wide variety of platforms TU Berlin
LDSL-tool Software for the simulation of longitudinal dynamics in semiconductor lasers WIAS
Lenné3D Software system for the modelling and visualization of vegetation, rural and urban landscape, and gardens, commercially distributed by the spin-off company Lenné3D GmbH ZIB
pdelib Toolbox for the solution of partial differential equations on the basis of the finite volume method and the finite element method WIAS
SCIP The currently fastest non-commercial mixed integer programming solver, providing also a framework for Constraint Integer Programming and branch-cut-and-price ZIB
SHIRA Skew Hamiltonian isotropic Implicitly Restarted Arnoldi, software for structured eigenvalue problems TU Berlin
solveDAE Matlab toolbox for the solution of arbitrary Differential Equations TU Berlin
SoPlex Implementation of the revised simplex algorithm, features primal and dual solving routines for linear programs and is implemented as a C++ class library that can be used with other programs ZIB
VPLAN General purpose tool for modeling, simulation, parameter estimation and optimum experimental design for processes which can be described by nonlinear DAE systems. HU Berlin
WIAS TeSCA Software for two and three dimensional semi-conductor analysis WIAS
WIAS-HiTNIHS A High Temperature Numerical Induction Heating Simulator WIAS
WIAS-QW Software for the simulation of strained multi quantum well structures WIAS
WIAS-SHarP Simulation and optimization software for laser and electron beam hardening WIAS
ZIMPL Language to translate the mathematical model of a problem into a linear or (mixed-) integer mathematical program readable by LP or MIP solvers. ZIB

More software and further information can be found on the following web pages of our participating institutions:

Patents

The following patents of our participating institutions are directly related to research activities in Matheon

Patent Short Description Participating institution
DE102005023145 Electrical circuit simulating method, involves automatically generating net list with components for replacement of capacitance in capacitance-voltage source loops and inductance in inductance-power source sections (inventors: F. Ebert, S. Bächle) TU Berlin
DE102005029437 (pending) Method for computer-assisted finding of similar molecules in data bases (inventors: M. Thimm, S. Hougardy, V. Ziegler)  HU Berlin
DE102005003428 Generation of representation of appearance of physical object under different diffuse lighting conditions involves combination of pixel signals obtained from virtual illuminations of model representation of object  (inventors: J. Hahn, K. Polthier) FU Berlin in cooperation with Daimler Chrysler AG
DE102005003427 Generation of representation of appearance of physical object under different diffuse lighting conditions involves combination of pixel signals obtained from virtual illuminations of model representation of object (inventors: J. Hahn, K. Polthier) FU Berlinin cooperation with Daimler Chrysler AG
DE102005003426 Generation of representation of appearance of physical object under different diffuse lighting conditions involves combination of pixel signals obtained from virtual illuminations of model representation of object (inventors: J. Hahn, K. Polthier) FU Berlin in cooperation with Daimler Chrysler AG
DE102004045121 Generation of representation of appearance of physical object (inventors: J. Hahn, K. Polthier) FU Berlin in cooperation with Daimler Chrysler AG
DE102004045119 Generation of representation of appearance of physical object under different diffuse lighting conditions involves combination of pixel signals obtained from virtual illuminations of model representation of object (inventors: J. Hahn, K. Polthier) FU Berlin in cooperation with Daimler Chrysler AG
DE102006013860  Generation of representation of appearance of physical object (inventors: J. Hahn, K. Polthier) FU Berlin in cooperation with Daimler Chrysler AG

The utilization of patents of our participating institutions Freie Universität Berlin, Humboldt Universität zu Berlin and Technische Universität Berlin is managed by the intellectual property asset management agency ipal GmbH.